Main wrapper file to generate paths

Uses previously calculated covariance matrix. Includes a diary of the command window output.

Steps:

Initialize particle's position
Load sim with appropriate output directory
Read the Cholesky matrix
For each path, generate the increment and generate the path.

WARNING: Do not erase folders SimManagerOutput, SimManagerLong, SimManagerRadius, SimManagerAlpha

Christel Hohenegger

Last updated: 04/15/2016

clearvars
diary('GenPaths')
load('./SimManagerAlpha/datFileNdx.mat')
for ii=1:length(fileNdx)
    fprintf('Working on data set %d\n',ii)
    parameters = fileNdx(ii);
    particles.numParticles = 1;
    particles.inX = parameters.length/2;
    particles.inY = parameters.length/2;
    particles.inXND = particles.inX/parameters.length;
    particles.inYND = particles.inY/parameters.length;
    sim = SimManager(parameters,particles,'./SimManagerAlpha');
    sim.ReadCholCov;
    for jj = 1:parameters.numPaths
        sim.GenIntegralInc;
        sim.GenWritePath(jj);
    end
    fprintf('\n')
end
diary off